species:   Comil
pid:       PID1162
parent:    milR30
paralog:   
locus:     NW_006271975.1:232345-232421
matures:   ['CAGUGACAAGGAUGUCCUCGGUG', 'CUGAGAGAAUGCUUUGCAUAUAGAG']
srr:       SRR8054060
genome:    /Users/jax/+Genomes/Fungal_genomes/Comil.GCF_000225605.1_CmilitarisCM01_v01_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Shao2019-xf.SRR8054060.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Shao2019-xf.SRR8054060.cram NW_006271975.1:232345-232421

2 out of bounds
6 alignments
3 proper strand
3 stranded perfect matches

     *************************               ***************************     
GUGGCUUCAGUGACAAGGAUGUCCUCGGUGCUCGCAAAUAGCCCUAGCUGAGAGAAUGCUUUGCAUAUAGAGGCGGC
((.(((((.(((.(((((...((((((((....((.....))....)))))).))...))))))))...))))).))
-------CAGUGACAAGGAUGUCCUCGGUG----------------------------------------------- l=23 a=0 c
-----------------------------------------------CUGAGAGAAUGCUUUGCAUAUAGAG----- l=25 a=0 c*
------------------AUGUCCUCGGUGCUCGCAAAUAG------------------------------------ l=23 a=1 ma
-----------------------------------------------CUGAGAGAAUGCUUUGCAUAUAGAG----- l=25 a=0 ma*

------------------AUGUCCUCGGUGCUCGCAAAUAG------------------------------------ l=23 a=1 (ma)
----------------GGAUGUCCUCGGUGCUCGCA----------------------------------------- l=20 a=1 
---------------AGGAUGUCCUCGGUGCUCG------------------------------------------- l=19 a=1 

mb-00010
ax-1001011
ku-01
ss-110110001100
fn-001
